The 10th International Workshop on Advanced Genomics

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ポスター発表一覧

P-01	Analysis of Human Disease-associated Genes using Next-generation Sequencing Data ○Kenichi Dedachi¹, Kyongsong Kim¹, Masao Yamaguchi¹ Amelieff Co. Ltd.
P-02	Innate Immunity Interactome Dynamics ○Asmaa Elzawahry^1,2, Ashwini Patil¹, Yutaro Kumagai^3,4, Yutaka Suzuki²,Kenta Nakai^1,2 ¹Institute of Medical Science, The University of Tokyo, Minato-ku, Tokyo, Japan ²Graduate school of Frontier Sciences, The University of Tokyo, Kashiwa-shi, Chiba, Japan ³Laboratory of Host Defence, WPI Immunology Frontier Research Center, Osaka University, ⁴Global Center of Excellence Program, Frontier Biomedical Science Underlying Organelle Network Biology,Osaka University,
P-03	RIKEN ENU Mutant Mouse Library with NGS: a new resource to model complex traits and polygenic diseases ○Ryutaro Fukumura, Hayato Kotaki, Takuya Murata, Shigeru Makino, Yuichi Ishitsuka, Yoichi Gondo. Mutagenesis & Genomics Team, RIKEN BRC
P-04	Ion ProtonTM System provides an easy-to-implement workflow solution for whole exome sequencing ○Kazuhiro Fukumura, Wataru Hashizume, Hikaru Taira, Yoichi Hase, Tomoko Sunayama, Naoki Kamei, Kyo Azuma, Masato Kondo, Miho Muraki, Satoshi Murakami, Yuko Tokunaga, Sachiro Asano, Takashi Furukawa, Takashi Ishikura, Osamu Takahashi, Tokio Onozaki, Hideki Hanaoka Life Technologies Japan
P-05	Today and tomorrow of Ion TorrentTM, scalable and rapid NGS Naoki Kamei, Wataru Hashizume, Hikaru Taira, Yoichi Hase, Tomoko Sunayama, Kyo Azuma, Masato Kondo, Miho Muraki, Satoshi Murakami, Yuko Tokunaga, Sachiro Asano, Takahisa Furukawa, Takashi shikura, Osamu Takahashi Technical Support, Life Technologies Japan
P-06	Genome-wide distribution of H3K27ac in HCC ○Akimasa Hayashi¹,Takanori Fujita¹, Genta Nagae¹, Hiroshi Kimura³, Naoko Yamauchi², Shunpei Ishikawa⁴, Masashi Fukayama² and Hiroyuki Aburatani¹ ¹Research Center for Advanced Science and Technology, The University of Tokyo ²Department of Human Pathology and Diagnostic Pathology, The University of Tokyo ³Graduate School of Frontier Biosciences, Osaka University ⁴Hard Tissue Genome Research Center, Tokyo Medical and Dental University
P-07	Genomics of a lactic acid bacteria isolated from the Okinawan natural environment ○Shinya Ikematsu¹, Hiroyuki Iha¹, Seikoh Saitoh², Hiroaki Aoyama², Ipputa Tada¹, Shuolin Song³, Naoya Shinzato² ¹Department of Bioresources Engineering, Okinawa National College of Technology, ²TBRC Center of Molecular Biosciences, University of the Ryukyus, 3Roche Diagnostics K.K.
P-08	igh-throughput analysis for mutant promoter using massively parallel sequencer ○Takuma Irie¹, Masahide Seki¹, Sumio Sugano¹, Yada Tetsushi², Yutaka Suzuki¹ ¹Laboratory of Functional Genomics, Department of Medical Genome Science, Graduate School of Frontier Science, The University of Tokyo ²Laboratory of Computational Biology, Department of Intelligence Science and Technology, Graduate School of Informatics, Kyoto University
P-09	Three founder mutations in the EYS gene in Japanese patients with autosomal recessive retinitis pigmentosa ○Masaki Iwanami^1,2, Tomomi Nishida¹, Satoshi Nakadomari¹, Akiko Nakajima², Yuko Seko², Seishi Kato² ¹Department of Ophthalmology, Hospital, ²Research Institute, National Rehabilitation Center for Persons with Disabilities
P-10	Comprehensive genomic characterization of gastric cancer xenografts ○Miwako Kakiuchi¹, Takashi Nishizawa², Kenji Tatsuno¹, Akimasa Hayashi¹, Hiroki Ueda¹, Shogo Yamamoto1,Genta Nagae¹, Shin-ichi Funahashi², Tetsuo Noda³, Shumpei Ishikawa⁴, Hiroyuki Aburatani¹ ¹Genome Science Division, Research Center for Advanced Science and Technology (RCAST), the University of Tokyo ²Forerunner Pharma Research Co., Ltd ³Japanese Foundation for Cancer Research ⁴Department of Genomic Pathology, Medical Research Institute, Tokyo Medical and Dental University
P-11	Development of a computer system for clinical sequencing ○Mamoru Kato¹, Isao Kurosaka¹, Hiromi Nakamura¹, Yasushi Totoki¹, Hitoshi Ichikawa¹, Tatsuji Mizukami¹, Hiromi Sakamoto¹, Sumiko Oonami1, Shingo Matsumoto1, Sachiyo Mimaki¹, Noboru Yamamoto¹, Teruhiko Yoshida¹, Hitoshi Nakagama¹, Katsuya Tsuchihara¹, Takashi Kohno¹, Tatsuhiro Shibata¹ ¹National Cancer Center, 5-1-1 Tsukiji, Tsuuoo-ku, Tokyo, Japan.
P-12	*Common variants in NCKAP5, SPRED1, and CRAT are associated with susceptibility to HLA-DQB106:02 negative essential hypersomnia** ○Seik-Soon Khor¹, Taku Miyagawa¹, Hiromi Toyoda¹, Maria Yamasaki¹, Yoshiya Kawamura2, Hisashi Tanii³, Yuji Okazaki⁴, Tsukasa Sasaki⁵, Ling Lin⁶, Juliette Faraco⁶, Tom Rico⁶, Yutaka Honda⁷, Makoto Honda⁷,8, Emmanuel Mignot⁶, Katsushi Tokunaga¹ ¹ Department of Human Genetics, Graduate School of Medicine, The University of Tokyo, ² Yokohama Clinic, Warakukai Medical Corporation, ³ Department of Psychiatry, Mie University School of Medicine, ⁴ Metropolitan Matsuzawa Hospital, ⁵ Graduate School of Education, The University of Tokyo, ⁶ Stanford Center for Sleep Sciences and Medicine, Stanford University School of Medicine, ⁷ Department of Somnology, Tokyo Medical University,.⁸ Sleep Research Project, Department of Psychiatry and Behavioral Sciences, Tokyo Metropolitan Institute of Medical Science,
P-13	Genomic-based 16S ribosomal RNA database ○Seok-Won Kim¹, Kenshiro Oshima¹, Wataru, Suda¹, Masahira Hattori¹ ¹Center for Omics and Bioinformatics, The Department of Computational Biology, Graduate School of Frontier Sciences, The University of Tokyo
P-14	DNA Sequence Variation Analysis Using Burrows-Wheeler Transform of Massive Short-Read Data ○Kouichi Kimura, Asako Koike Central Research Laboratory, Hitachi, Ltd., Kokubunji, Tokyo, Japan
P-15	Pre-Clinical Assessment of Hcc Chemoprevention in Cirrhotic Tissue Microenvironment: Implication of Egf Pathway ○Kensuke Kojima¹, Suguru Yamada², Lan Wei², Tsutomu Fujii², Gregory Y. Lauwers², Mike Lanuti², Augusto Villanueva³, Josep Llovet¹, Kenneth Tanabe², Bryan C. Fuchs², Yujin Hoshida¹ ¹Mount Sinai School of Medicine, New York, United States ²Massachusetts General Hospital, Boston, United States ³Hospital Clinic, Barcelona, Spain
P-16	Novel relationships between nucleosome positioning and DNA methylation found in Neurospora crassa ○Keita Komatsu¹, Fumihito Miura², Takashi Ito1,² ¹Department of Computational Biology, Graduate School of Frontier Sciences, The University of Tokyo ²Department of Biophysics and Biochemistry, Graduate School of Science, The University of Tokyo
P-17	A method for quality control of NGS library using an automated electrophoresis platform, MCE-202 MultiNA. ○Hidesato Kumagai¹,Akihiro Arai¹,Akira Harada¹,Taigo Nishida¹,Shin Nakamura¹,Takashi Watanabe², Yoko Kuroki²,Osamu Ohara²,³ ¹Clinical & Biotechnology Business Unit, Life Science Business Department, SHIMADZU CORPORATION ²Laboratory for immunogenomics, RIKEN Research Center for Allergy and Immunology ³Department of Human Genome Res., Kazusa DNA Research Institute
P-18	Seven rules that regard positioning and orientation of motifs in promoters of co-expressed Genes ○Yosvany López¹,², Ashwini Patil¹, Kenta Nakai¹ ¹ Human Genome Center, The Institute of Medical Science, The University of Tokyo ²Department of Computational Biology, Graduate School of Frontier Sciences, The University of Tokyo
P-19	Genome-wide analysis of the UPF1 (Up-frameshift protein 1) targets in human cells ○Sho Maekawa¹ Sumio Sugano¹ Nobuyoshi Akimitsu² Yutaka Suzuki¹ ¹Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo ²Radioisotope Center, The University of Tokyo
P-20	Construction and Analysis of TSS and TTS with Mate Pair Libraries ○Kyoko Matsymoto¹, Yutaka Suzuki¹, Sumio Sugano¹ ¹Laboratry of Functional Genomics,Department of Medical Genome Science Graduate School of Frontier Science,The University of Tokyo
P-21	Highly sensitive target methylome sequencing by post-bisulfite adaptor tagging ○Fumihito Miura¹,Takashi Ito¹br> ¹Department of Biophysics and Biochemistry, Graduate School of Science, The University of Tokyo
P-22	CoLo: a de novo clustering algorithm for identifying co-localized factors through multiple ChIP-seq data comparison ○Ryo Nakaki¹, Shuichi Tsutsumi¹, Hiroyuki Aburatani¹ ¹Genome Science Division, Research Center for Advanced Science and Technology, The University of Tokyo
P-23	Functional features of Japanese gut microbiomes ○Suguru Nishijima¹, Kenshiro Oshima¹, Seok-Won Kim¹, Wataru Suda¹, Hidetoshi Morita², Masahira Hattori¹ ¹Center for Omics and Bioinformatics, The University of Tokyo, ²School of Veterinary Medicine, Azabu University
P-24	Browser Plat form for Next Genome Sequencing Data - GenomeJack ○Yasuo Ohara¹, Keizo Uehara¹,Sachio Nohara¹,Motokazu Ishikawa¹,Chihiro Okada1,Takuro Takabayashi¹,Shigeki Tanishima¹, ¹Mitsubishi Space Software
P-25	The Workflow of Cancer Mutation Screening and Validation from small amount of fragmented DNA samples ○Shinsaku Ohtaki¹, Manabu Watanabe², Junko Kusano², Yoshiharu Hayashi², Hiroshi Shiraga¹ ¹LifeTechnologies Japan Technical Support ²LifeTechnologies Japan Scientific Affairs
P-26	Whole-exome sequencing (WES) using formalin-fixed paraffin embedded (FFPE) tissue ○Kota Ouchi¹, Kenji Tatsuno¹, Akimasa Hayashi¹, Shogo Yamamoto¹, Hiroki Ueda¹, Hiroyuki Aburatani¹ ¹Genome Science Division, Research Center for Advanced Science and Technology (RCAST), The University of Tokyo
P-27	Customizing de novo trancriptome assembly Prachi Jain¹, Neeraja M Krishnan¹ ,○Binay Panda1¹,² ¹Ganit Labs, Bio-IT Centre, Institute of Bioinformatics and Applied Biotechnology (IBAB), India ²Strand Life Sciences, Bangalore 560024, India
P-28	A Comprehensive Profile of ChIP-Seq-Based STAT1 Target Genes Suggests the Complexity of STAT1-Mediated Gene Regulatory Mechanisms ○Jun-ichi Satoh¹, Hiroko Tabunoki¹ ¹Department of Bioinformatics and Molecular Neuropathology, Meiji Pharmaceutical University
P-29	Genome wide mapping of REST complex binding sites in mouse ES cells ○Masahide Seki¹, Yutaka Suzuki¹, Sumio Sugano¹ ¹Laboratory of Functional Genomics, Department of Medical Genome, Graduate School of Frontier Sciences, The University of Tokyo
P-30	Mutational profiling with surgically resected tumor specimens from Japanese patients with non-small cell lung cancer by ultra-deep targeted sequencing ○Masakuni Serizawa¹, Yasuhiro Koh¹, Mitsuhiro Isaka², ,Hirotsugu Kenmotsu³, Keita Mori⁴, Akane Naruoka¹, Junko Suzuki¹, Kazushige Wakuda³, Masato Abe⁵, Isamu Hayashi⁵, Masahiro Endo⁶, Takashi Nakajima⁵, Yasuhisa Ohde², Toshiaki Takahashi³, Nobuyuki Yamamoto³ ¹Drug discovery and development division, Shizuoka Cancer Center Research institute ²Thoracic surgery division, ³Thoracic oncology division, ⁴Clinical trial coordination office, ⁵Diagnostic pathology division, ⁶Image diagnosis division, Shizuoka Cancer Center
P-31	The expression of Ten-eleven translocation protein and distribution of 5-hydroxymethylcytosine in liver cancer ○Kiyokazu Shirai¹1,², Genta Nagae¹, Yotaro Kudo³, Motoaki Seki¹, Masato Yonezawa¹, Tsuyoshi Osawa⁴, Yutaka Midorikawa⁵, Keisuke Tateishi³, Masao Ichinose², Hiroyuki Aburatani¹ ¹Genome Science Division, Research Center for Advanced Science and Technology, the University of Tokyo, ²Second Department of Internal Medicine, Wakayama Medical University, ³Department of Gastroenterology, Graduate School of Medicine, the University of Tokyo, ⁴Laboratory for Vascular Biology, Research Center for Advanced Science and Technology, the University of Tokyo, ⁵Department of Digestive Surgery, Nihon University School of Medicine
P-32	Characterization of cancer mutation patterns in lung cancers ○Ayako Suzuki¹, Katsuya Tsuchihara², Sumio Sugano¹, Hiroyasu Esumi², Yutaka Suzuki¹ ¹Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo ²Division of Translational Research, Research Center for Innovative Oncology, National Cancer Center Hospital East
P-33	Integration of IonTorrent™ sequencers and Data analysis tools ○Osamu Takahashi, Takashi Ishikura, Takahisa Furukawa, Sachiro Asano, Kazuhiro Fukumura, Naoki Kamei, Wataru Hashizume, Hikaru Taira, Yoichi Hase, Tomoko Sunayama, Kyo Azuma, Masato Kondo, Miho Muraki, Satoshi Murakami, Yuko Tokunaga, Tokio Onozaki, Hideki Hanaoka Field Application Scientists, Life Technologies Japan
P-34	A Mathematical Model of The Ecosystem of Intestinal Microbiome ○Lena Takayasu1, Wataru Suda¹, Hiroshi Ohno², Shinji Fukuda², Misako Takayasu³, Hideki Takayasu⁴, Masahira Hattori¹ ¹Graduate School of Frontier Sciences, the University of Tokyo ²Research Center for Allergy and Immunology, RIKEN ³Interdisciplinary Graduate School of Science and Engineering, Tokyo Tech. ⁴Sony Computer Science Laboratories, Inc.
P-35	Integrated Analysis of Genomic Alterations in Hepatocellular Carcinoma ○Kenji Tatsuno¹, Hiroki Ueda¹, Shogo Yamamoto¹, Genta Nagae¹, Shingo Tsuji¹, Kohtarou Sonoda¹, Akimasa Hayashi¹,², Yutaka Midorikawa¹,⁴, Norihiro Kokudo³, Yasushi Totoki⁵, Tatsuhiro Shibata⁵, Hiroyuki Aburatani¹ ¹Genome Science Div., RCAST, University of Tokyo, ²Dept. Pathology, Graduate School of Medicine, University of Tokyo ³Hepato-Biliary-Pancreatic Surgery Div., Graduate School of Medicine, University of Tokyo ⁴Dept. Digestive Surgery, Nihon University School of Medicine ⁵Div. of Cancer Genomics, National Cancer Center Research Institute
P-36	De-novo sequencing using the third-generation sequencer PacBioRS in Okinawa ○Yasunobu Terabayashi¹, Kazuma Nakano¹, Makiko Shimoji¹, Hinako Tamotsu¹, Kuniko Teruya¹, Morimi Teruya², Ayaka Arasaki¹, Akino Shiroma¹, Misako Aoyama¹, Kazuhito Satou¹, Takashi Hirano¹,³ ¹Okinawa Institute of Advanced Sciences ²Okinawa Industrial Technology Center ³Okinawa Science and Technology Promotion Center
P-37	Unique mutation portraits and frequent COL2A1 gene alteration in chondrosarcoma ○Yasushi Totoki¹, Akihiko Yoshida², Fumie Hosoda¹, Koichi Ogura³, Hiromi Nakamura¹, Natsuko Hama¹, Aki Yoshida⁴, Tomohiro Fujiwara³, Yasuhito Arai¹, Hitoshi Tsuda², Satoru Miyano⁵, Junya Toguchida⁶, Akira Kawai³, Tatsuhiro Shibata¹ ¹Division of Cancer Genomics, National Cancer Center Research Institute, ²Division of Pathology and Clinical Laboratories, ³Division of Musculoskeletal Oncology, National Cancer Center Hospital, ⁴Department of Orthopaedic Surgery, Okayama University Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, ⁵Laboratory of DNA Informatics Analysis, Human Genome Center, The Institute of Medical Science, The University of Tokyo, ⁶Department of Tissue Regeneration, Institute for Frontier Medical Sciences, Kyoto University
P-38	Tumor cellularity conscious genotyper and analysis pipeline for cancer exome sequencing ○Hiroki Ueda¹, Kenji Tatsuno¹ ,Shogo Yamamoto¹ ,Genta Nagae¹, Shingo Tsuji¹, Kohtarou Sonoda¹, Shumpei Ishikawa¹,², Yutaka Midorikawa¹,⁴, Norihiro Kokudo³, and Hiroyuki Aburatani¹ ¹Genome Science Division, RCAST, University of Tokyo, Japan,²Department of Pathology, and ³Hepato-Biliary-Pancreatic Surgery Division, Graduate School of Medicine, University of Tokyo, Japan, ⁴Department of Surgery, Teikyo University School of Medicine University Hospital,Mizonokuchi, Japan
P-39	Genome Analysis of iPS Cells for Regenerative Medicine ○Akira Watanabe¹, Naoki Amano¹, Masahiro Nakamura¹, Akiko Fukuhara¹, Poolsap Unyanee¹, Yumi Tokunaga¹,², Masao Yamaguchi², Takashi Aoi¹, Keisuke Okita¹, Kazutoshi Takahashi¹,Shinya Yamanaka¹. ¹Center for iPS Cell Research and Application, Kyoto University ²Amelieff
P-40	Molecular dynamics approach to protein domain decomposition ○Masanori Yamanaka Department of Physics, College of Science and Technology, Nihon University
P-41	Integration and Data Mining on Public Cancer Genome Databases ○Ryota Yamanaka¹, Shingo Tsuji¹, Hiroyuki Aburatani¹ ¹Genome Science Division, RCAST, The University of Tokyo
P-42	Genome-wide CNV (copy number variation) analysis of narcolepsy in the Japanese population ○Maria Yamasaki¹, Taku Miyagawa¹, Hiromi Toyoda¹, Seik Soon Khor¹, Asako Koike², Tsukasa Sasaki³, Yutaka Honda⁴, Makoto Honda⁴,⁵, Katsushi Tokunaga¹ ¹Department of Human Genetics, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan ² Central Research Laboratory, Hitachi Ltd., Tokyo, Japan ³Department of Physical and Health Education, Graduate School of Education, The University of Tokyo, Tokyo, Japan ⁴Japan Somnology Center, Neuropsychiatric Research Institute, Tokyo, Japan ⁵Sleep Control Project, Department of Psychiatry and Behavioral Sciences, Tokyo Metropolitan Institute of Medical Science, Tokyo, Japan
P-43	*Draft genome sequence of European pear (Pyrus communis* L).** ○Satoshi Yuhara1, Katsuhiro Shiratake², Hitoshi Mori², Kanji Isuzugawa³, Akira Oikawa⁴, Yoshiyuki Ogata⁵, Yoshimasa Tsujimoto¹, Toshiharu Ohba¹, Masanori Takayama¹, Masanari Kitagawa¹ ¹Takara Bio Inc., ²Nagoya University, ³Yamagata Integrated Agricultural Research Center, ⁴RIKEN PSC, ⁵Osaka Prefecture University