| P-01 |
Analysis of Human Disease-associated Genes using Next-generation Sequencing Data
○Kenichi Dedachi1, Kyongsong Kim1, Masao Yamaguchi1
Amelieff Co. Ltd.
|
| P-02 |
Innate Immunity Interactome Dynamics
○Asmaa Elzawahry1,2, Ashwini Patil1, Yutaro Kumagai3,4, Yutaka Suzuki2,Kenta Nakai1,2
1Institute of Medical Science, The University of Tokyo, Minato-ku, Tokyo, Japan
2Graduate school of Frontier Sciences, The University of Tokyo, Kashiwa-shi, Chiba, Japan
3Laboratory of Host Defence, WPI Immunology Frontier Research Center, Osaka University,
4Global Center of Excellence Program, Frontier Biomedical
Science Underlying Organelle Network Biology,Osaka University,
|
| P-03 |
RIKEN ENU Mutant Mouse Library with NGS: a new resource to model complex traits and
polygenic diseases
○Ryutaro Fukumura, Hayato Kotaki, Takuya Murata, Shigeru Makino, Yuichi Ishitsuka, Yoichi Gondo.
Mutagenesis & Genomics Team, RIKEN BRC
|
| P-04 |
Ion ProtonTM System provides an easy-to-implement workflow solution for whole exome
sequencing
○Kazuhiro Fukumura, Wataru Hashizume, Hikaru Taira, Yoichi Hase, Tomoko Sunayama, Naoki Kamei,
Kyo Azuma, Masato Kondo, Miho Muraki, Satoshi Murakami, Yuko Tokunaga, Sachiro Asano,
Takashi Furukawa, Takashi Ishikura, Osamu Takahashi, Tokio Onozaki, Hideki Hanaoka
Life Technologies Japan
|
| P-05 |
Today and tomorrow of Ion TorrentTM, scalable and rapid NGS
Naoki Kamei, Wataru Hashizume, Hikaru Taira, Yoichi Hase, Tomoko Sunayama, Kyo Azuma,
Masato Kondo, Miho Muraki, Satoshi Murakami, Yuko Tokunaga, Sachiro Asano, Takahisa Furukawa,
Takashi shikura, Osamu Takahashi
Technical Support, Life Technologies Japan
|
| P-06 |
Genome-wide distribution of H3K27ac in HCC
○Akimasa Hayashi1,Takanori Fujita1, Genta Nagae1, Hiroshi Kimura3, Naoko Yamauchi2, Shunpei Ishikawa4,
Masashi Fukayama2 and Hiroyuki Aburatani1
1Research Center for Advanced Science and Technology, The University of Tokyo
2Department of Human Pathology and Diagnostic Pathology, The University of Tokyo
3Graduate School of Frontier Biosciences, Osaka University
4Hard Tissue Genome Research Center, Tokyo Medical and Dental University
|
| P-07 |
Genomics of a lactic acid bacteria isolated from the Okinawan natural environment
○Shinya Ikematsu1, Hiroyuki Iha1, Seikoh Saitoh2, Hiroaki Aoyama2, Ipputa Tada1, Shuolin Song3,
Naoya Shinzato2
1Department of Bioresources Engineering, Okinawa National College of Technology,
2TBRC Center of Molecular Biosciences, University of the Ryukyus, 3Roche Diagnostics K.K.
|
| P-08 |
High-throughput analysis for mutant promoter using massively parallel
sequencer
○Takuma Irie1, Masahide Seki1, Sumio Sugano1, Yada Tetsushi2, Yutaka Suzuki1
1Laboratory of Functional Genomics, Department of Medical Genome Science, Graduate School of Frontier
Science, The University of Tokyo
2Laboratory of Computational Biology, Department of Intelligence Science and Technology, Graduate School of
Informatics, Kyoto University
|
| P-09 |
Three founder mutations in the EYS gene in Japanese patients with autosomal recessive
retinitis pigmentosa
○Masaki Iwanami1,2, Tomomi Nishida1, Satoshi Nakadomari1, Akiko Nakajima2, Yuko Seko2, Seishi Kato2
1Department of Ophthalmology, Hospital, 2Research Institute, National Rehabilitation Center for Persons with
Disabilities
|
| P-10 |
Comprehensive genomic characterization of gastric cancer xenografts
○Miwako Kakiuchi1, Takashi Nishizawa2, Kenji Tatsuno1, Akimasa Hayashi1, Hiroki Ueda1,
Shogo Yamamoto1,Genta Nagae1, Shin-ichi Funahashi2, Tetsuo Noda3, Shumpei Ishikawa4,
Hiroyuki Aburatani1
1Genome Science Division, Research Center for Advanced Science and Technology (RCAST), the University
of Tokyo
2Forerunner Pharma Research Co., Ltd
3Japanese Foundation for Cancer Research
4Department of Genomic Pathology, Medical Research Institute, Tokyo Medical and Dental University
|
| P-11 |
Development of a computer system for clinical sequencing
○Mamoru Kato1, Isao Kurosaka1, Hiromi Nakamura1, Yasushi Totoki1, Hitoshi Ichikawa1,
Tatsuji Mizukami1, Hiromi Sakamoto1, Sumiko Oonami1, Shingo Matsumoto1, Sachiyo Mimaki1,
Noboru Yamamoto1, Teruhiko Yoshida1, Hitoshi Nakagama1, Katsuya Tsuchihara1, Takashi Kohno1,
Tatsuhiro Shibata1
1National Cancer Center, 5-1-1 Tsukiji, Tsuuoo-ku, Tokyo, Japan.
|
| P-12 |
Common variants in NCKAP5, SPRED1, and CRAT are associated with susceptibility to
HLA-DQB1*06:02 negative essential hypersomnia
○Seik-Soon Khor1, Taku Miyagawa1, Hiromi Toyoda1, Maria Yamasaki1, Yoshiya Kawamura2, Hisashi Tanii3,
Yuji Okazaki4, Tsukasa Sasaki5, Ling Lin6, Juliette Faraco6, Tom Rico6, Yutaka Honda7, Makoto Honda7,8,
Emmanuel Mignot6, Katsushi Tokunaga1
1 Department of Human Genetics, Graduate School of Medicine, The University of Tokyo, 2 Yokohama Clinic,
Warakukai Medical Corporation, 3 Department of Psychiatry, Mie University School of Medicine, 4 Metropolitan
Matsuzawa Hospital, 5 Graduate School of Education, The University of Tokyo, 6 Stanford Center for Sleep
Sciences and Medicine, Stanford University School of Medicine, 7 Department of Somnology, Tokyo Medical
University,.8 Sleep Research Project, Department of Psychiatry and Behavioral Sciences, Tokyo Metropolitan
Institute of Medical Science,
|
| P-13 |
Genomic-based 16S ribosomal RNA database
○Seok-Won Kim1, Kenshiro Oshima1, Wataru, Suda1, Masahira Hattori1
1Center for Omics and Bioinformatics, The Department of Computational Biology, Graduate School of Frontier
Sciences, The University of Tokyo
|
| P-14 |
DNA Sequence Variation Analysis Using Burrows-Wheeler Transform of Massive Short-Read
Data
○Kouichi Kimura, Asako Koike
Central Research Laboratory, Hitachi, Ltd., Kokubunji, Tokyo, Japan
|
| P-15 |
Pre-Clinical Assessment of Hcc Chemoprevention in Cirrhotic Tissue Microenvironment:
Implication of Egf Pathway
○Kensuke Kojima1, Suguru Yamada2, Lan Wei2, Tsutomu Fujii2, Gregory Y. Lauwers2, Mike Lanuti2,
Augusto Villanueva3, Josep Llovet1, Kenneth Tanabe2, Bryan C. Fuchs2, Yujin Hoshida1
1Mount Sinai School of Medicine, New York, United States
2Massachusetts General Hospital, Boston, United States
3Hospital Clinic, Barcelona, Spain
|
| P-16 |
Novel relationships between nucleosome positioning and DNA methylation found in
Neurospora crassa
○Keita Komatsu1, Fumihito Miura2, Takashi Ito1,2
1Department of Computational Biology, Graduate School of Frontier Sciences, The University of Tokyo
2Department of Biophysics and Biochemistry, Graduate School of Science, The University of Tokyo
|
| P-17 |
A method for quality control of NGS library using an automated electrophoresis platform,
MCE-202 MultiNA.
○Hidesato Kumagai1,Akihiro Arai1,Akira Harada1,Taigo Nishida1,Shin Nakamura1,Takashi Watanabe2,
Yoko Kuroki2,Osamu Ohara2,3
1Clinical & Biotechnology Business Unit, Life Science Business Department, SHIMADZU CORPORATION
2Laboratory for immunogenomics, RIKEN Research Center for Allergy and Immunology
3Department of Human Genome Res., Kazusa DNA Research Institute
|
| P-18 |
Seven rules that regard positioning and orientation of motifs in promoters of co-expressed
Genes
○Yosvany López1,2, Ashwini Patil1, Kenta Nakai1
1 Human Genome Center, The Institute of Medical Science, The University of Tokyo
2Department of Computational Biology, Graduate School of Frontier Sciences, The University of Tokyo
|
| P-19 |
Genome-wide analysis of the UPF1 (Up-frameshift protein 1) targets in human cells
○Sho Maekawa1 Sumio Sugano1 Nobuyoshi Akimitsu2 Yutaka Suzuki1
1Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo
2Radioisotope Center, The University of Tokyo
|
| P-20 |
Construction and Analysis of TSS and TTS with Mate Pair Libraries
○Kyoko Matsymoto1, Yutaka Suzuki1, Sumio Sugano1
1Laboratry of Functional Genomics,Department of Medical Genome Science Graduate School of Frontier
Science,The University of Tokyo
|
| P-21 |
Highly sensitive target methylome sequencing by post-bisulfite adaptor tagging
○Fumihito Miura1,Takashi Ito1br>
1Department of Biophysics and Biochemistry, Graduate School of Science, The University of Tokyo
|
| P-22 |
CoLo: a de novo clustering algorithm for identifying co-localized factors through
multiple ChIP-seq data comparison
○Ryo Nakaki1, Shuichi Tsutsumi1, Hiroyuki Aburatani1
1Genome Science Division, Research Center for Advanced Science and Technology, The University of Tokyo
|
| P-23 |
Functional features of Japanese gut microbiomes
○Suguru Nishijima1, Kenshiro Oshima1, Seok-Won Kim1, Wataru Suda1, Hidetoshi Morita2, Masahira Hattori1
1Center for Omics and Bioinformatics, The University of Tokyo, 2School of Veterinary Medicine, Azabu
University
|
| P-24 |
Browser Plat form for Next Genome Sequencing Data - GenomeJack
○Yasuo Ohara1, Keizo Uehara1,Sachio Nohara1,Motokazu Ishikawa1,Chihiro Okada1,Takuro
Takabayashi1,Shigeki Tanishima1,
1Mitsubishi Space Software
|
| P-25 |
The Workflow of Cancer Mutation Screening and Validation from small amount of
fragmented DNA samples
○Shinsaku Ohtaki1, Manabu Watanabe2, Junko Kusano2, Yoshiharu Hayashi2, Hiroshi Shiraga1
1LifeTechnologies Japan Technical Support
2LifeTechnologies Japan Scientific Affairs
|
| P-26 |
Whole-exome sequencing (WES) using formalin-fixed paraffin embedded (FFPE) tissue
○Kota Ouchi1, Kenji Tatsuno1, Akimasa Hayashi1, Shogo Yamamoto1, Hiroki Ueda1, Hiroyuki Aburatani1
1Genome Science Division, Research Center for Advanced Science and Technology (RCAST), The University
of Tokyo
|
| P-27 |
Customizing de novo trancriptome assembly
Prachi Jain1, Neeraja M Krishnan1 ,○Binay Panda11,2
1Ganit Labs, Bio-IT Centre, Institute of Bioinformatics and Applied Biotechnology (IBAB), India
2Strand Life Sciences, Bangalore 560024, India
|
| P-28 |
A Comprehensive Profile of ChIP-Seq-Based STAT1 Target Genes Suggests the Complexity of
STAT1-Mediated Gene Regulatory Mechanisms
○Jun-ichi Satoh1, Hiroko Tabunoki1
1Department of Bioinformatics and Molecular Neuropathology, Meiji Pharmaceutical University
|
| P-29 |
Genome wide mapping of REST complex binding sites in mouse ES cells
○Masahide Seki1, Yutaka Suzuki1, Sumio Sugano1
1Laboratory of Functional Genomics, Department of Medical Genome, Graduate School of Frontier Sciences,
The University of Tokyo
|
| P-30 |
Mutational profiling with surgically resected tumor specimens from Japanese patients with
non-small cell lung cancer by ultra-deep targeted sequencing
○Masakuni Serizawa1, Yasuhiro Koh1, Mitsuhiro Isaka2, ,Hirotsugu Kenmotsu3, Keita Mori4, Akane Naruoka1,
Junko Suzuki1, Kazushige Wakuda3, Masato Abe5, Isamu Hayashi5, Masahiro Endo6, Takashi Nakajima5,
Yasuhisa Ohde2, Toshiaki Takahashi3, Nobuyuki Yamamoto3
1Drug discovery and development division, Shizuoka Cancer Center Research institute
2Thoracic surgery division, 3Thoracic oncology division, 4Clinical trial coordination office, 5Diagnostic pathology
division, 6Image diagnosis division, Shizuoka Cancer Center
|
| P-31 |
The expression of Ten-eleven translocation protein and distribution of
5-hydroxymethylcytosine in liver cancer
○Kiyokazu Shirai11,2, Genta Nagae1, Yotaro Kudo3, Motoaki Seki1, Masato Yonezawa1, Tsuyoshi Osawa4,
Yutaka Midorikawa5, Keisuke Tateishi3, Masao Ichinose2, Hiroyuki Aburatani1
1Genome Science Division, Research Center for Advanced Science and Technology, the University of Tokyo,
2Second Department of Internal Medicine, Wakayama Medical University,
3Department of Gastroenterology, Graduate School of Medicine, the University of Tokyo, 4Laboratory for
Vascular Biology, Research Center for Advanced Science and Technology, the University of Tokyo,
5Department of Digestive Surgery, Nihon University School of Medicine
|
| P-32 |
Characterization of cancer mutation patterns in lung cancers
○Ayako Suzuki1, Katsuya Tsuchihara2, Sumio Sugano1, Hiroyasu Esumi2, Yutaka Suzuki1
1Department of Medical Genome Sciences, Graduate School of Frontier Sciences, The University of Tokyo
2Division of Translational Research, Research Center for Innovative Oncology, National Cancer Center Hospital
East
|
| P-33 |
Integration of IonTorrent™ sequencers and Data analysis tools
○Osamu Takahashi, Takashi Ishikura, Takahisa Furukawa, Sachiro Asano, Kazuhiro Fukumura, Naoki Kamei,
Wataru Hashizume, Hikaru Taira, Yoichi Hase, Tomoko Sunayama, Kyo Azuma, Masato Kondo, Miho Muraki,
Satoshi Murakami, Yuko Tokunaga, Tokio Onozaki, Hideki Hanaoka
Field Application Scientists, Life Technologies Japan
|
| P-34 |
A Mathematical Model of The Ecosystem of Intestinal Microbiome
○Lena Takayasu1, Wataru Suda1, Hiroshi Ohno2, Shinji Fukuda2, Misako Takayasu3, Hideki Takayasu4,
Masahira Hattori1
1Graduate School of Frontier Sciences, the University of Tokyo
2Research Center for Allergy and Immunology, RIKEN
3Interdisciplinary Graduate School of Science and Engineering, Tokyo Tech.
4Sony Computer Science Laboratories, Inc.
|
| P-35 |
Integrated Analysis of Genomic Alterations in Hepatocellular Carcinoma
○Kenji Tatsuno1, Hiroki Ueda1, Shogo Yamamoto1, Genta Nagae1, Shingo Tsuji1, Kohtarou Sonoda1,
Akimasa Hayashi1,2, Yutaka Midorikawa1,4, Norihiro Kokudo3, Yasushi Totoki5, Tatsuhiro Shibata5,
Hiroyuki Aburatani1
1Genome Science Div., RCAST, University of Tokyo,
2Dept. Pathology, Graduate School of Medicine, University of Tokyo
3Hepato-Biliary-Pancreatic Surgery Div., Graduate School of Medicine, University of Tokyo
4Dept. Digestive Surgery, Nihon University School of Medicine
5Div. of Cancer Genomics, National Cancer Center Research Institute
|
| P-36 |
De-novo sequencing using the third-generation sequencer PacBioRS in Okinawa
○Yasunobu Terabayashi1, Kazuma Nakano1, Makiko Shimoji1, Hinako Tamotsu1, Kuniko Teruya1,
Morimi Teruya2, Ayaka Arasaki1, Akino Shiroma1, Misako Aoyama1, Kazuhito Satou1, Takashi Hirano1,3
1Okinawa Institute of Advanced Sciences
2Okinawa Industrial Technology Center
3Okinawa Science and Technology Promotion Center
|
| P-37 |
Unique mutation portraits and frequent COL2A1 gene alteration in chondrosarcoma
○Yasushi Totoki1, Akihiko Yoshida2, Fumie Hosoda1, Koichi Ogura3, Hiromi Nakamura1, Natsuko Hama1,
Aki Yoshida4, Tomohiro Fujiwara3, Yasuhito Arai1, Hitoshi Tsuda2, Satoru Miyano5, Junya Toguchida6,
Akira Kawai3, Tatsuhiro Shibata1
1Division of Cancer Genomics, National Cancer Center Research Institute, 2Division of Pathology and Clinical
Laboratories, 3Division of Musculoskeletal Oncology, National Cancer Center Hospital, 4Department of
Orthopaedic Surgery, Okayama University Graduate School of Medicine, Dentistry and Pharmaceutical
Sciences, 5Laboratory of DNA Informatics Analysis, Human Genome Center, The Institute of Medical Science,
The University of Tokyo, 6Department of Tissue Regeneration, Institute for Frontier Medical Sciences, Kyoto
University
|
| P-38 |
Tumor cellularity conscious genotyper and analysis pipeline for cancer exome sequencing
○Hiroki Ueda1, Kenji Tatsuno1 ,Shogo Yamamoto1 ,Genta Nagae1, Shingo Tsuji1, Kohtarou Sonoda1,
Shumpei Ishikawa1,2, Yutaka Midorikawa1,4, Norihiro Kokudo3, and Hiroyuki Aburatani1
1Genome Science Division, RCAST, University of Tokyo,
Japan,2Department of Pathology, and 3Hepato-Biliary-Pancreatic
Surgery Division, Graduate School of Medicine,
University of Tokyo, Japan, 4Department of Surgery, Teikyo University School of Medicine University Hospital,Mizonokuchi, Japan
|
| P-39 |
Genome Analysis of iPS Cells for Regenerative Medicine
○Akira Watanabe1, Naoki Amano1, Masahiro Nakamura1, Akiko Fukuhara1, Poolsap Unyanee1,
Yumi Tokunaga1,2, Masao Yamaguchi2, Takashi Aoi1, Keisuke Okita1, Kazutoshi Takahashi1,Shinya Yamanaka1.
1Center for iPS Cell Research and Application, Kyoto University
2Amelieff
|
| P-40 |
Molecular dynamics approach to protein domain decomposition
○Masanori Yamanaka
Department of Physics, College of Science and Technology, Nihon University
|
| P-41 |
Integration and Data Mining on Public Cancer Genome Databases
○Ryota Yamanaka1, Shingo Tsuji1, Hiroyuki Aburatani1
1Genome Science Division, RCAST, The University of Tokyo
|
| P-42 |
Genome-wide CNV (copy number variation) analysis of narcolepsy in the Japanese population
○Maria Yamasaki1, Taku Miyagawa1, Hiromi Toyoda1, Seik Soon Khor1, Asako Koike2, Tsukasa Sasaki3, Yutaka Honda4, Makoto Honda4,5, Katsushi Tokunaga1
1Department of Human Genetics, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan
2 Central Research Laboratory, Hitachi Ltd., Tokyo, Japan
3Department of Physical and Health Education, Graduate School of Education, The University of Tokyo, Tokyo, Japan
4Japan Somnology Center, Neuropsychiatric Research Institute, Tokyo, Japan
5Sleep Control Project, Department of Psychiatry and Behavioral Sciences, Tokyo Metropolitan Institute of Medical Science, Tokyo, Japan
|
| P-43 |
Draft genome sequence of European pear (Pyrus communis L).
○Satoshi Yuhara1, Katsuhiro Shiratake2, Hitoshi Mori2, Kanji Isuzugawa3, Akira Oikawa4, Yoshiyuki Ogata5,
Yoshimasa Tsujimoto1, Toshiharu Ohba1, Masanori Takayama1, Masanari Kitagawa1
1Takara Bio Inc., 2Nagoya University, 3Yamagata Integrated Agricultural Research Center,
4RIKEN PSC, 5Osaka Prefecture University
|
|
